OMAT5P009275
with_AGI_gene
<html><body><title>OMAT5P009275</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u500092750000i/OMAT5P009275.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u500092750000i/OMAT5P009275.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u500092750000i/OMAT5P009275.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500091000000i">OMAT5P009100</a></td><td>0.937039</td><td>-</td><td>AT5G26800</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400051900000i">OMAT4P005190</a></td><td>0.937028</td><td>-</td><td>AT4G17540</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200121500000i">OMAT2P012150</a></td><td>0.936442</td><td>-</td><td>AT2G44065</td><td>ribosomal protein L2 family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200112800000i">OMAT2P011280</a></td><td>0.93616</td><td>-</td><td>AT2G41670</td><td>GTP-binding family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100023100000i">OMAT1P002310</a></td><td>0.93536</td><td>-</td><td>AT1G07210</td><td>30S ribosomal protein S18 family</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300067700000i">OMAT3P006770</a></td><td>0.932501</td><td>-</td><td>AT3G17890</td><td>unknown protein</td><td>AtsnoR89</td><td>AtsnoR89</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100228000000i">OMAT1P022800</a></td><td>0.932124</td><td>-</td><td>AT1G77440</td><td>PBC2</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100148100000i">OMAT1P014810</a></td><td>0.93096</td><td>-</td><td>AT1G53530</td><td>signal peptidase I family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300030700000i">OMAT3P003070</a></td><td>0.930285</td><td>-</td><td>AT3G08980</td><td>signal peptidase I family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200049900000i">OMAT2P004990</a></td><td>0.928416</td><td>-</td><td>AT2G24280</td><td>serine carboxypeptidase S28 family protein</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301129100000i">OMAT3P112910</a></td><td>-0.680848</td><td>-</td><td>AT3G53990</td><td>universal stress protein (USP) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401014200000i">OMAT4P101420</a></td><td>-0.649226</td><td>-</td><td>AT4G05050</td><td>UBQ11 (UBIQUITIN 11)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401013300000i">OMAT4P101330</a></td><td>-0.646131</td><td>-</td><td>AT4G04770</td><td>ATABC1 (ATP BINDING CASSETTE PROTEIN 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301063800000i">OMAT3P106380</a></td><td>-0.636706</td><td>-</td><td>AT3G19260</td><td>LOH2 (LAG ONE HOMOLOGUE 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201097700000i">OMAT2P109770</a></td><td>-0.628301</td><td>-</td><td>AT2G39720</td><td>RHC2A</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301038500000i">OMAT3P103850</a></td><td>-0.624158</td><td>-</td><td>AT3G11670</td><td>DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101106700000i">OMAT1P110670</a></td><td>-0.613467</td><td>-</td><td>AT1G34220</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501088000000i">OMAT5P108800</a></td><td>-0.609131</td><td>-</td><td>AT5G36160</td><td>aminotransferase-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100075400000i">OMAT1P007540</a></td><td>-0.60026</td><td>-</td><td>AT1G20620</td><td>CAT3 (CATALASE 3)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201075900000i">OMAT2P107590</a></td><td>-0.588035</td><td>-</td><td>AT2G34420</td><td>LHB1B2</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u500092750000i/OMAT5P009275-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 5.46e-08</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>5.46e-08 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006364</td><td>rRNA processing</td><td>14/200</td><td>22.38</td><td>8.54e-17</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0009451</td><td>RNA modification</td><td>14/200</td><td>18.48</td><td>1.64e-15</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006396</td><td>RNA processing</td><td>20/200</td><td>9.04</td><td>1.09e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0042254</td><td>ribosome biogenesis</td><td>15/200</td><td>11.71</td><td>2.73e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0022613</td><td>ribonucleoprotein complex biogenesis</td><td>15/200</td><td>11.34</td><td>4.50e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0043170</td><td>macromolecule metabolic process</td><td>71/200</td><td>1.83</td><td>2.49e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0010467</td><td>gene expression</td><td>45/200</td><td>2.21</td><td>9.82e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0016070</td><td>RNA metabolic process</td><td>25/200</td><td>2.94</td><td>4.36e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0006508</td><td>proteolysis</td><td>15/200</td><td>3.58</td><td>5.59e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0044238</td><td>primary metabolic process</td><td>77/200</td><td>1.55</td><td>5.93e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006412</td><td>translation</td><td>20/200</td><td>2.76</td><td>1.38e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0019538</td><td>protein metabolic process</td><td>41/200</td><td>1.78</td><td>8.55e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044260</td><td>cellular macromolecule metabolic process</td><td>56/200</td><td>1.59</td><td>9.59e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0090304</td><td>nucleic acid metabolic process</td><td>29/200</td><td>1.93</td><td>2.23e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006139</td><td>nucleobase, nucleoside, nucleotide and nucleic acid metabolic process</td><td>31/200</td><td>1.84</td><td>3.37e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0034641</td><td>cellular nitrogen compound metabolic process</td><td>33/200</td><td>1.70</td><td>9.30e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006807</td><td>nitrogen compound metabolic process</td><td>33/200</td><td>1.66</td><td>1.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0030529</td><td>ribonucleoprotein complex</td><td>33/200</td><td>9.46</td><td>1.27e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0033279</td><td>ribosomal subunit</td><td>16/200</td><td>9.85</td><td>8.49e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0005840</td><td>ribosome</td><td>19/200</td><td>7.42</td><td>1.78e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0043228</td><td>non-membrane-bounded organelle</td><td>26/200</td><td>4.36</td><td>6.55e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0043232</td><td>intracellular non-membrane-bounded organelle</td><td>26/200</td><td>4.36</td><td>6.55e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>5</td><td>GO:0015934</td><td>large ribosomal subunit</td><td>11/200</td><td>11.95</td><td>1.69e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0005622</td><td>intracellular</td><td>86/200</td><td>1.62</td><td>1.78e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044446</td><td>intracellular organelle part</td><td>34/200</td><td>2.37</td><td>8.00e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044422</td><td>organelle part</td><td>34/200</td><td>2.37</td><td>8.15e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044424</td><td>intracellular part</td><td>81/200</td><td>1.59</td><td>1.09e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0022626</td><td>cytosolic ribosome</td><td>10/200</td><td>5.43</td><td>2.78e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0070013</td><td>intracellular organelle lumen</td><td>11/200</td><td>4.06</td><td>2.06e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0043233</td><td>organelle lumen</td><td>11/200</td><td>4.05</td><td>2.11e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0005737</td><td>cytoplasm</td><td>59/200</td><td>1.58</td><td>7.56e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0044444</td><td>cytoplasmic part</td><td>55/200</td><td>1.58</td><td>1.23e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0043229</td><td>intracellular organelle</td><td>65/200</td><td>1.41</td><td>8.62e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>113/200</td><td>1.23</td><td>8.86e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005739</td><td>mitochondrion</td><td>14/200</td><td>2.19</td><td>2.06e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005829</td><td>cytosol</td><td>10/200</td><td>2.42</td><td>3.16e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0003735</td><td>structural constituent of ribosome</td><td>18/200</td><td>8.31</td><td>8.47e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016787</td><td>hydrolase activity</td><td>26/200</td><td>1.66</td><td>3.78e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>103/200</td><td>1.20</td><td>6.42e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>99/200</td><td>1.24</td><td>2.09e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001078</td><td>E expanded cotyledon stage</td><td>101/200</td><td>1.22</td><td>4.09e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0004507</td><td>D bilateral stage</td><td>99/200</td><td>1.20</td><td>7.11e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ribosomal</td><td>-</td><td>21/200</td><td>6.96</td><td>5.14e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ribosome</td><td>-</td><td>19/200</td><td>7.20</td><td>3.07e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>constituent</td><td>-</td><td>18/200</td><td>6.42</td><td>7.34e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>structural</td><td>-</td><td>18/200</td><td>5.13</td><td>3.03e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>translation</td><td>-</td><td>21/200</td><td>4.24</td><td>6.30e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>proteolysis</td><td>-</td><td>14/200</td><td>5.72</td><td>3.00e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>large</td><td>-</td><td>11/200</td><td>7.17</td><td>5.46e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>cytosolic</td><td>-</td><td>12/200</td><td>5.60</td><td>2.85e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>peptidase</td><td>-</td><td>15/200</td><td>3.77</td><td>2.92e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>subunit</td><td>-</td><td>21/200</td><td>2.86</td><td>4.84e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>mitochondrial</td><td>-</td><td>10/200</td><td>4.43</td><td>1.88e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>intracellular</td><td>-</td><td>15/200</td><td>2.91</td><td>6.91e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>nucleotide</td><td>-</td><td>15/200</td><td>2.36</td><td>7.11e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT5G27400&keyword=nucleotide">3.00E-07</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>mitochondrion</td><td>-</td><td>12/200</td><td>2.19</td><td>3.68e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
0.64189300000000004687